PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g06450.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family YABBY
Protein Properties Length: 213aa    MW: 23896.3 Da    PI: 7.9678
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g06450.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY132.36.1e-41161765170
           YABBY   5 ssseqvCy..vqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 
                     + s+q+ y   +  f   ++ vsvP tslfk+vtvrCGhCt+ll vn++      +++ hl++s+  + ++ l+   +      +++ + s+s++
  Vang11g06450.2  16 FLSHQIIYhfFHSCFSPSMFQVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLVPSPTQFHLGHSFFSPSHNLLEEIPNPSPNFLMNQANLSASNE 110
                     56677766336888999***********************************************9998666665555555555555555554444 PP

           YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      +   +   +e+pr+p ++r     + vP    +  ++eiqrik+ nPdi+hreafsaaaknWahfP+ihfgl
  Vang11g06450.2 111 FSLPARTAADELPRPPIINR-----RPVPLVEEK--RDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGL 176
                     43335666777786555444.....447776665..9**********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.2E-3926176IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MPTSSPTRYS SLIFFFLSHQ IIYHFFHSCF SPSMFQVSVP CTSLFKTVTV RCGHCTNLLP  60
VNMRGLLVPS PTQFHLGHSF FSPSHNLLEE IPNPSPNFLM NQANLSASNE FSLPARTAAD  120
ELPRPPIINR RPVPLVEEKR DEIQRIKSVN PDITHREAFS AAAKNWAHFP HIHFGLMPDQ  180
TVKKTNVCQQ EGEEVLMKDG FYASANVGVS PY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-146AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549900.11e-114PREDICTED: protein YABBY 4-like isoform X1
SwissprotO221522e-54YAB1_ARATH; Axial regulator YABBY 1
SwissprotQ0JBF04e-54YAB5_ORYSJ; Protein YABBY 5
SwissprotQ01JG24e-54YAB5_ORYSI; Protein YABBY 5
TrEMBLA0A0S3R5T61e-140A0A0S3R5T6_PHAAN; Uncharacterized protein
STRINGGLYMA17G14710.11e-114(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-50YABBY family protein